Almost-Delauanay Tetrahedra (AlmDel) For analyzing protein structure
	Alpha Shapes General purpose software for analyzing protein structures
	Ciel For generating interface surfaces from protein structural data.
	Coreset For computing shape descriptors of low-dimensional data sets
	Monte Carlo Simulation For performing efficient Monte Carlo simulations of proteins
	ProShape For computing protein measures and their derivatives
	Skin Software: current version | original version For triangulating the surface of a protein
	Stochastic Roadmap Simulation (SRS) For computing ensemble properties of molecular motions (folding, binding)
	Writhe For computing the writhing number of protein backbones

	CGAL: Computational Geometry Algorithms Library
	Computational Geometry Pages lists additional software
	Geomview
	LEDA
	VTK: The visualization toolkit